Variant report

Variant	rs59707513
Chromosome Location	chr3:69188307-69188308
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs17005392	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17005400	0.83[AMR][1000 genomes]
rs34107395	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs4405924	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4615083	0.83[AMR][1000 genomes]
rs6774962	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876933	chr3:69059023-69227379	Enhancers Strong transcription Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:69178000-69193600	Weak transcription	Psoas Muscle	Psoas
2	chr3:69180200-69190600	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr3:69187000-69190400	Weak transcription	Hela-S3	cervix

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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