Variant report

Variant	rs4408268
Chromosome Location	chr11:94444685-94444686
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10831271	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10831272	0.81[EUR][1000 genomes]
rs11020896	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11020910	0.96[ASN][1000 genomes]
rs11020911	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11020912	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11020920	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11020924	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1430858	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1986413	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.90[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2068908	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2895570	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs56197136	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57565482	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72965891	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72967813	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72967827	0.96[ASN][1000 genomes]
rs7350489	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7939825	0.81[EUR][1000 genomes]
rs891552	1.00[ASW][hapmap];0.95[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs4408268	SESN3	cis	cerebellum	SCAN
rs4408268	C11orf75	cis	parietal	SCAN

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:94439800-94449800	Weak transcription	Aorta	Aorta
2	chr11:94442000-94444800	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr11:94442800-94445000	Genic enhancers	NHEK	skin
4	chr11:94443200-94445000	Genic enhancers	HMEC	breast
5	chr11:94443400-94444800	Weak transcription	Psoas Muscle	Psoas
6	chr11:94444000-94448200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr11:94444000-94449400	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr11:94444400-94448400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr11:94444600-94444800	Enhancers	Skeletal Muscle Female	skeletal muscle

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