Variant report

Variant	rs891552
Chromosome Location	chr11:94461572-94461573
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:94459919..94462386-chr11:94473219..94474826,2	K562	blood:

Variant related genes	Relation type
ENSG00000255929	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10831271	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11020896	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11020911	0.97[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11020912	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11020920	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11020924	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1430858	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1986413	0.95[CEU][hapmap];0.84[MEX][hapmap];0.95[TSI][hapmap];0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2068908	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2895570	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4408268	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs56197136	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs57565482	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72965891	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72967813	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7350489	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7939825	0.83[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs891552	SESN3	cis	cerebellum	SCAN

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:94450200-94465000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:94455400-94467800	Weak transcription	Psoas Muscle	Psoas
3	chr11:94457800-94463000	Weak transcription	K562	blood
4	chr11:94458000-94462400	Enhancers	HMEC	breast
5	chr11:94458600-94465200	Weak transcription	Right Atrium	heart
6	chr11:94458600-94473200	Weak transcription	Esophagus	oesophagus
7	chr11:94458800-94462400	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr11:94459000-94465000	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr11:94459600-94462200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr11:94460000-94462000	Weak transcription	Placenta	Placenta
11	chr11:94460000-94463600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr11:94460400-94461600	Enhancers	Skeletal Muscle Female	skeletal muscle
13	chr11:94460400-94462000	Enhancers	NHEK	skin
14	chr11:94460600-94462000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr11:94460600-94462400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr11:94460800-94462000	Enhancers	Skeletal Muscle Male	skeletal muscle
17	chr11:94461000-94462400	Enhancers	Hela-S3	cervix
18	chr11:94461000-94462600	Enhancers	HSMMtube	muscle
19	chr11:94461200-94462600	Enhancers	HSMM	muscle
20	chr11:94461200-94462800	Enhancers	NHDF-Ad	bronchial
21	chr11:94461200-94463000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr11:94461200-94468200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr11:94461400-94462400	Enhancers	Muscle Satellite Cultured Cells	--
24	chr11:94461400-94462400	Enhancers	Osteobl	bone
25	chr11:94461400-94473200	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr11:94461400-94473400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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