Variant report

Variant	rs7350489
Chromosome Location	chr11:94452476-94452477
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:94445867..94449600-chr11:94452303..94456575,4	K562	blood:
2	chr11:94446711..94449600-chr11:94452303..94455717,4	K562	blood:

Extended variants
information (count: 20 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10831271	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10831272	0.83[EUR][1000 genomes]
rs11020896	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11020910	0.98[ASN][1000 genomes]
rs11020911	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11020912	0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11020920	0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11020924	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1430858	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1986413	0.95[CEU][hapmap];0.85[CHD][hapmap];0.91[JPT][hapmap];0.94[MEX][hapmap];0.90[MKK][hapmap];0.97[TSI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2068908	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2895570	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4408268	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56197136	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57565482	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72965891	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72967813	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72967827	0.98[ASN][1000 genomes]
rs7939825	0.83[EUR][1000 genomes]
rs891552	1.00[ASW][hapmap];1.00[CEU][hapmap];0.97[GIH][hapmap];0.93[LWK][hapmap];0.91[MEX][hapmap];0.97[TSI][hapmap];0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs7350489	C11orf75	cis	parietal	SCAN
rs7350489	SESN3	cis	cerebellum	SCAN

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:94448800-94453200	Weak transcription	HMEC	breast
2	chr11:94450200-94452600	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr11:94450200-94453000	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr11:94450200-94453200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr11:94450200-94453200	Weak transcription	Psoas Muscle	Psoas
6	chr11:94450200-94465000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr11:94450400-94452800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr11:94450400-94453000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr11:94450600-94453600	Weak transcription	NHEK	skin
10	chr11:94451400-94452800	Weak transcription	Breast Myoepithelial Primary Cells	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links