Variant report

Variant	rs72967813
Chromosome Location	chr11:94440801-94440802
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10831271	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11020896	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11020910	0.98[ASN][1000 genomes]
rs11020911	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11020912	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11020920	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11020924	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1430858	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1986413	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2068908	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2895570	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4408268	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56197136	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57565482	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72965891	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72967827	0.98[ASN][1000 genomes]
rs7350489	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs891552	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes]

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:94438400-94441000	Enhancers	Hela-S3	cervix
2	chr11:94439000-94441200	Active TSS	Skeletal Muscle Female	skeletal muscle
3	chr11:94439400-94441000	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr11:94439400-94441000	Enhancers	Pancreas	Pancrea
5	chr11:94439400-94441600	Enhancers	Fetal Intestine Large	intestine
6	chr11:94439600-94444000	Active TSS	Skeletal Muscle Male	skeletal muscle
7	chr11:94439800-94441200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr11:94439800-94441200	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr11:94439800-94441200	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr11:94439800-94441600	Enhancers	Fetal Intestine Small	intestine
11	chr11:94439800-94442000	Enhancers	Stomach Mucosa	stomach
12	chr11:94439800-94449800	Weak transcription	Aorta	Aorta
13	chr11:94440000-94442600	Weak transcription	NH-A	brain
14	chr11:94440200-94441200	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr11:94440200-94441600	Enhancers	Psoas Muscle	Psoas
16	chr11:94440400-94441000	Enhancers	Duodenum Mucosa	Duodenum
17	chr11:94440600-94442400	Flanking Active TSS	HMEC	breast
18	chr11:94440800-94441000	Active TSS	Breast Myoepithelial Primary Cells	Breast
19	chr11:94440800-94441000	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
20	chr11:94440800-94441200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr11:94440800-94441800	Weak transcription	HepG2	liver
22	chr11:94440800-94442000	Flanking Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr11:94440800-94442800	Transcr. at gene 5' and 3'	NHEK	skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links