Variant report

Variant	rs440883
Chromosome Location	chr6:132326108-132326109
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs12199097	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs170881	0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs173055	0.88[ASN][1000 genomes]
rs233907	0.81[ASN][1000 genomes]
rs233909	0.83[ASN][1000 genomes]
rs233910	0.83[ASN][1000 genomes]
rs233912	0.85[ASN][1000 genomes]
rs233914	0.82[ASN][1000 genomes]
rs233915	0.85[ASN][1000 genomes]
rs233916	0.85[ASN][1000 genomes]
rs233918	0.85[ASN][1000 genomes]
rs233920	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs233921	0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs233922	0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs233924	0.99[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs233926	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs233927	0.99[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs233933	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs233936	0.80[JPT][hapmap]
rs233939	0.83[CHB][hapmap];0.90[JPT][hapmap];0.85[ASN][1000 genomes]
rs233942	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs233943	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs233945	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs403374	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs412319	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs693712	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv470861	chr6:132291785-132351866	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv886672	chr6:132299748-132349215	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv886673	chr6:132299748-132363507	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv427768	chr6:132300468-132398477	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv970350	chr6:132317890-132327515	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132325600-132327000	Enhancers	Primary B cells from peripheral blood	blood
2	chr6:132325800-132327000	Enhancers	Duodenum Mucosa	Duodenum
3	chr6:132325800-132327000	Enhancers	Fetal Intestine Small	intestine
4	chr6:132325800-132327000	Enhancers	HepG2	liver
5	chr6:132325800-132327200	Enhancers	Rectal Mucosa Donor 31	rectum
6	chr6:132326000-132326200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr6:132326000-132326400	Enhancers	Primary B cells from cord blood	blood
8	chr6:132326000-132326800	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr6:132326000-132326800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr6:132326000-132326800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr6:132326000-132327000	Enhancers	Primary hematopoietic stem cells short term culture	blood
12	chr6:132326000-132327000	Enhancers	HUVEC	blood vessel
13	chr6:132326000-132327200	Enhancers	Fetal Intestine Large	intestine
14	chr6:132326000-132330400	Weak transcription	H9 Cell Line	embryonic stem cell

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