Variant report

Variant	rs173055
Chromosome Location	chr6:132325398-132325399
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs1206719	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs1206726	0.86[CHB][hapmap];0.83[JPT][hapmap]
rs1206733	0.86[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs1206734	0.86[CHB][hapmap];0.83[JPT][hapmap];0.86[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs12199097	0.82[ASN][1000 genomes]
rs12527379	0.96[CEU][hapmap];1.00[YRI][hapmap];0.90[EUR][1000 genomes]
rs13437472	0.88[AFR][1000 genomes]
rs170881	0.87[ASN][1000 genomes]
rs1930999	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1931000	0.96[CEU][hapmap];0.88[EUR][1000 genomes]
rs2095252	0.96[CEU][hapmap];1.00[YRI][hapmap];0.91[EUR][1000 genomes]
rs2223259	0.83[AFR][1000 genomes]
rs233907	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs233909	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs233910	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs233912	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs233914	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs233915	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs233916	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs233918	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs233920	0.86[ASN][1000 genomes]
rs233921	0.87[ASN][1000 genomes]
rs233922	0.87[ASN][1000 genomes]
rs233924	0.87[ASN][1000 genomes]
rs233926	0.87[ASN][1000 genomes]
rs233927	0.86[ASN][1000 genomes]
rs233933	0.88[ASN][1000 genomes]
rs233935	0.87[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs233936	0.84[CEU][hapmap];0.82[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs233939	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs233942	0.85[ASN][1000 genomes]
rs233943	0.87[ASN][1000 genomes]
rs233945	0.87[ASN][1000 genomes]
rs403374	0.88[ASN][1000 genomes]
rs412319	0.88[ASN][1000 genomes]
rs440883	0.88[ASN][1000 genomes]
rs693712	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9321322	0.94[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv470861	chr6:132291785-132351866	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv886672	chr6:132299748-132349215	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv886673	chr6:132299748-132363507	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv427768	chr6:132300468-132398477	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv970350	chr6:132317890-132327515	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132324400-132325400	ZNF genes & repeats	Rectal Mucosa Donor 31	rectum
2	chr6:132325200-132325400	ZNF genes & repeats	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links