Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	6:132282174-132286019..6:132646256-132647474	Hela-S3	cervix:
2	6:132282174-132286019..6:132641847-132646256	GM12878	blood:

Variant related genes	Relation type
ENSG00000079931	Chromatin interaction

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1206734	1.00[ASW][hapmap]
rs12527379	1.00[ASW][hapmap];1.00[CEU][hapmap];0.81[CHD][hapmap];0.93[GIH][hapmap];0.82[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs173055	0.91[EUR][1000 genomes]
rs1813069	0.83[ASN][1000 genomes]
rs1930999	0.91[EUR][1000 genomes]
rs1931000	1.00[CEU][hapmap];0.81[CHD][hapmap];0.98[GIH][hapmap];0.82[JPT][hapmap];0.89[TSI][hapmap];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs233907	0.91[EUR][1000 genomes]
rs233909	0.92[EUR][1000 genomes]
rs233910	0.92[EUR][1000 genomes]
rs233912	0.91[EUR][1000 genomes]
rs233914	0.85[EUR][1000 genomes]
rs233915	0.91[EUR][1000 genomes]
rs233916	0.91[EUR][1000 genomes]
rs233918	0.91[EUR][1000 genomes]
rs233935	1.00[ASW][hapmap];1.00[YRI][hapmap]
rs233936	0.80[CEU][hapmap];1.00[YRI][hapmap]
rs233939	0.92[CEU][hapmap];1.00[YRI][hapmap];0.91[EUR][1000 genomes]
rs6935514	1.00[ASW][hapmap]
rs6939234	1.00[ASW][hapmap]
rs928505	0.88[JPT][hapmap];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv7968	chr6:131917172-132321099	Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132275600-132299800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr6:132276200-132287400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr6:132276600-132297800	Weak transcription	Ovary	ovary
4	chr6:132277000-132287800	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr6:132277200-132287600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr6:132277400-132287600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr6:132277400-132291200	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr6:132277400-132305600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr6:132280000-132284000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr6:132280800-132293800	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr6:132281600-132284800	Weak transcription	Stomach Mucosa	stomach
12	chr6:132282000-132284600	Weak transcription	Stomach Smooth Muscle	stomach
13	chr6:132282000-132291400	Weak transcription	Fetal Brain Male	brain
14	chr6:132282200-132283800	Weak transcription	HepG2	liver
15	chr6:132282200-132287400	Weak transcription	Osteobl	bone
16	chr6:132282200-132287600	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr6:132282400-132287400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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