Variant report

Variant	rs6939234
Chromosome Location	chr6:132409903-132409904
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11154662	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1206719	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1206726	0.85[CEU][hapmap];0.86[CHB][hapmap];0.86[MKK][hapmap];0.88[TSI][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1206729	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1206731	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1206732	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1206733	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1206734	1.00[ASW][hapmap];0.84[CEU][hapmap];0.86[CHB][hapmap];0.88[MKK][hapmap];0.90[TSI][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12527379	1.00[ASW][hapmap]
rs13437472	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2095252	1.00[ASW][hapmap]
rs2223259	0.96[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2327198	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs233935	1.00[ASW][hapmap];0.85[CEU][hapmap];0.86[CHB][hapmap];0.88[TSI][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs233936	0.84[CEU][hapmap];0.82[CHB][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4895927	1.00[CEU][hapmap];0.95[CHB][hapmap];0.84[JPT][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6569773	1.00[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6918708	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6935514	1.00[ASW][hapmap];1.00[CEU][hapmap];0.98[GIH][hapmap];0.90[JPT][hapmap];1.00[LWK][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs693712	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9321322	0.95[CEU][hapmap];0.97[EUR][1000 genomes]
rs9321323	0.96[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762616	chr6:132404708-132584324	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132404000-132410400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr6:132406800-132410000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr6:132406800-132410400	Enhancers	Muscle Satellite Cultured Cells	--
4	chr6:132407200-132410000	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr6:132407200-132411600	Weak transcription	Pancreas	Pancrea
6	chr6:132407200-132420400	Weak transcription	Aorta	Aorta
7	chr6:132408200-132417600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr6:132408600-132410200	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr6:132408600-132411000	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr6:132408800-132410000	Weak transcription	Brain Germinal Matrix	brain
11	chr6:132408800-132410400	Enhancers	H1 Cell Line	embryonic stem cell
12	chr6:132409000-132410200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr6:132409200-132411200	Enhancers	HUES48 Cell Line	embryonic stem cell
14	chr6:132409600-132410000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr6:132409600-132410400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr6:132409600-132410400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr6:132409600-132411000	Enhancers	iPS-18 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links