Variant report

Variant	rs2327198
Chromosome Location	chr6:132431321-132431322
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11154662	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1206719	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1206726	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1206729	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1206731	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1206732	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1206733	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1206734	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13437472	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2223259	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs233935	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs233936	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4895927	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6569773	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6918708	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6935514	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6939234	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9321322	0.83[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs9321323	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762616	chr6:132404708-132584324	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132423200-132436800	Weak transcription	Aorta	Aorta
2	chr6:132423600-132435400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr6:132431200-132431400	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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