Variant report

Variant	rs4895927
Chromosome Location	chr6:132375483-132375484
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	6:132269655-132282174..6:132373869-132383497	GM12878	blood:
2	6:132176847-132180372..6:132373869-132383497	K562	blood:
3	6:132182612-132191683..6:132373869-132383497	Hela-S3	cervix:

Variant related genes	Relation type
ENSG00000227220	Chromatin interaction
ENSG00000197594	Chromatin interaction
ENSG00000118523	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11154662	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1206719	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1206726	0.84[CEU][hapmap];0.91[CHB][hapmap];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1206729	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1206731	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1206732	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1206733	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1206734	0.83[CEU][hapmap];0.91[CHB][hapmap];0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13437472	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2223259	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2327198	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs233935	0.84[CEU][hapmap];0.91[CHB][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs233936	0.84[CEU][hapmap];0.87[CHB][hapmap];0.80[JPT][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6569773	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6918708	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6935514	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs693712	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6939234	1.00[CEU][hapmap];0.95[CHB][hapmap];0.84[JPT][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9321322	0.95[CEU][hapmap];0.97[EUR][1000 genomes]
rs9321323	0.96[CEU][hapmap];0.95[CHB][hapmap];0.83[JPT][hapmap];0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427768	chr6:132300468-132398477	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv3491956	chr6:132373959-132380057	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	esv3491953	chr6:132374434-132379932	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	esv3491957	chr6:132374521-132379465	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	esv3474263	chr6:132375031-132379054	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	esv3474264	chr6:132375072-132379038	Weak transcription ZNF genes & repeats Enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	esv3491955	chr6:132375078-132379063	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
8	esv3491954	chr6:132375112-132379027	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
9	esv3491950	chr6:132375118-132378983	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
10	esv3491958	chr6:132375118-132378983	ZNF genes & repeats Weak transcription Enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
11	esv3512337	chr6:132375159-132376956	Enhancers Weak transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
12	esv3512338	chr6:132375159-132376956	Enhancers Weak transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
13	esv3474265	chr6:132375195-132378902	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132373200-132376400	Enhancers	Muscle Satellite Cultured Cells	--
2	chr6:132373600-132376200	Enhancers	NHDF-Ad	bronchial
3	chr6:132373800-132376200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr6:132373800-132376600	Enhancers	NHLF	lung
5	chr6:132374200-132376200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr6:132374400-132376200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr6:132374400-132376200	Enhancers	Osteobl	bone
8	chr6:132374400-132376800	Enhancers	HMEC	breast
9	chr6:132374600-132376200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr6:132374600-132376200	Enhancers	NH-A	brain
11	chr6:132375000-132384800	Weak transcription	Pancreas	Pancrea
12	chr6:132375200-132376200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr6:132375400-132376200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr6:132375400-132376400	Enhancers	NHEK	skin
15	chr6:132375400-132376600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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