Variant report
| Variant | rs6918708 |
|---|---|
| Chromosome Location | chr6:132418809-132418810 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs11154662 | 0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs1206719 | 0.85[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs1206726 | 0.89[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs1206729 | 0.89[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs1206731 | 0.89[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs1206732 | 0.89[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs1206733 | 0.90[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs1206734 | 0.90[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs13437472 | 1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs2223259 | 0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs2327198 | 0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs233935 | 0.86[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs233936 | 0.86[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs4895927 | 0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs6569773 | 0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs6935514 | 0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs693712 | 0.80[AMR][1000 genomes] |
| rs6939234 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs9321322 | 0.94[EUR][1000 genomes] |
| rs9321323 | 0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2762616 | chr6:132404708-132584324 | Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 22 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:132407200-132420400 | Weak transcription | Aorta | Aorta |
