Variant report

Variant	rs233936
Chromosome Location	chr6:132352569-132352570
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	6:132269655-132282174..6:132349036-132358071	K562	blood:

Variant related genes	Relation type
ENSG00000227220	Chromatin interaction
ENSG00000118523	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs11154662	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1206719	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1206726	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1206729	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1206731	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1206732	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1206733	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1206734	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12527379	0.80[CEU][hapmap];1.00[YRI][hapmap]
rs13437472	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs173055	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1931000	0.80[CEU][hapmap]
rs2095252	0.80[CEU][hapmap];1.00[YRI][hapmap]
rs2223259	0.82[CEU][hapmap];0.87[CHB][hapmap];0.85[JPT][hapmap];0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2327198	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs233907	0.94[AFR][1000 genomes]
rs233909	1.00[AFR][1000 genomes]
rs233910	1.00[AFR][1000 genomes]
rs233915	0.80[AMR][1000 genomes]
rs233916	0.80[AMR][1000 genomes]
rs233918	0.80[AMR][1000 genomes]
rs233935	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs233939	0.81[CEU][hapmap];0.82[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4895927	0.84[CEU][hapmap];0.87[CHB][hapmap];0.80[JPT][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6569773	0.85[CEU][hapmap];0.86[CHB][hapmap];0.84[JPT][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6918708	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6935514	0.84[CEU][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs693712	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6939234	0.84[CEU][hapmap];0.82[CHB][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9321322	0.94[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs9321323	0.81[CEU][hapmap];0.81[CHB][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886673	chr6:132299748-132363507	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv427768	chr6:132300468-132398477	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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