Variant report

Variant	rs1931000
Chromosome Location	chr6:132289424-132289425
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs12527379	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.89[TSI][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs173055	0.88[EUR][1000 genomes]
rs1813069	0.97[ASN][1000 genomes]
rs1930999	0.97[EUR][1000 genomes]
rs2095252	1.00[CEU][hapmap];0.81[CHD][hapmap];0.98[GIH][hapmap];0.82[JPT][hapmap];0.89[TSI][hapmap];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs233907	0.91[EUR][1000 genomes]
rs233909	0.91[EUR][1000 genomes]
rs233910	0.91[EUR][1000 genomes]
rs233912	0.90[EUR][1000 genomes]
rs233914	0.83[EUR][1000 genomes]
rs233915	0.88[EUR][1000 genomes]
rs233916	0.88[EUR][1000 genomes]
rs233918	0.88[EUR][1000 genomes]
rs233936	0.80[CEU][hapmap]
rs233939	0.92[CEU][hapmap];0.89[EUR][1000 genomes]
rs928505	1.00[CHB][hapmap];0.87[CHD][hapmap];0.94[JPT][hapmap];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv7968	chr6:131917172-132321099	Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132275600-132299800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr6:132276600-132297800	Weak transcription	Ovary	ovary
3	chr6:132277400-132291200	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr6:132277400-132305600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr6:132280800-132293800	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr6:132282000-132291400	Weak transcription	Fetal Brain Male	brain
7	chr6:132285400-132289600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr6:132285400-132297800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr6:132288000-132289600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr6:132288200-132291200	Weak transcription	HepG2	liver
11	chr6:132288200-132291400	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr6:132289200-132290000	Enhancers	Stomach Mucosa	stomach
13	chr6:132289200-132290200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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