Variant report

Variant	rs233909
Chromosome Location	chr6:132307750-132307751
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs1206719	0.86[AFR][1000 genomes]
rs1206726	0.81[CEU][hapmap];0.82[CHB][hapmap];0.91[GIH][hapmap];0.84[JPT][hapmap];0.83[TSI][hapmap]
rs1206733	0.86[AFR][1000 genomes]
rs1206734	1.00[ASW][hapmap];0.80[CEU][hapmap];0.82[CHB][hapmap];0.90[GIH][hapmap];0.83[JPT][hapmap];0.80[LWK][hapmap];0.86[TSI][hapmap];0.86[AFR][1000 genomes]
rs12527379	1.00[ASW][hapmap];0.96[CEU][hapmap];0.86[TSI][hapmap];1.00[YRI][hapmap];0.93[EUR][1000 genomes]
rs13437472	0.88[AFR][1000 genomes]
rs170881	0.86[ASN][1000 genomes]
rs173055	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1930999	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1931000	0.96[CEU][hapmap];0.81[GIH][hapmap];0.91[EUR][1000 genomes]
rs2095252	1.00[ASW][hapmap];0.96[CEU][hapmap];0.86[TSI][hapmap];1.00[YRI][hapmap];0.92[EUR][1000 genomes]
rs2223259	0.83[AFR][1000 genomes]
rs233907	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs233910	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs233912	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs233914	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs233915	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs233916	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs233918	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs233920	0.85[ASN][1000 genomes]
rs233921	0.86[ASN][1000 genomes]
rs233922	0.86[ASN][1000 genomes]
rs233924	0.86[ASN][1000 genomes]
rs233926	0.86[ASN][1000 genomes]
rs233927	0.85[ASN][1000 genomes]
rs233933	0.83[ASN][1000 genomes]
rs233935	1.00[ASW][hapmap];0.81[CEU][hapmap];0.82[CHB][hapmap];0.91[GIH][hapmap];0.89[JPT][hapmap];1.00[LWK][hapmap];0.86[MKK][hapmap];0.86[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs233936	0.84[CEU][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs233939	0.96[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs233942	0.84[ASN][1000 genomes]
rs233943	0.86[ASN][1000 genomes]
rs233945	0.86[ASN][1000 genomes]
rs403374	0.83[ASN][1000 genomes]
rs412319	0.83[ASN][1000 genomes]
rs440883	0.83[ASN][1000 genomes]
rs6935514	1.00[ASW][hapmap];0.81[TSI][hapmap]
rs693712	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6939234	1.00[ASW][hapmap];0.81[TSI][hapmap]
rs9321322	0.94[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv7968	chr6:131917172-132321099	Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv470861	chr6:132291785-132351866	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv886672	chr6:132299748-132349215	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv886673	chr6:132299748-132363507	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
5	nsv427768	chr6:132300468-132398477	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132298200-132319000	Weak transcription	Aorta	Aorta
2	chr6:132303000-132320600	Weak transcription	Left Ventricle	heart
3	chr6:132304800-132309000	Weak transcription	Ovary	ovary
4	chr6:132304800-132320600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr6:132306200-132319800	Weak transcription	HSMM	muscle
6	chr6:132306200-132321400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr6:132307200-132309400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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