Variant report

Variant	rs4456395
Chromosome Location	chr13:85260240-85260241
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11841820	0.98[ASN][1000 genomes]
rs12431069	0.86[EUR][1000 genomes]
rs1374425	0.95[EUR][1000 genomes]
rs17078360	0.95[EUR][1000 genomes]
rs17324250	0.95[EUR][1000 genomes]
rs1917891	1.00[AFR][1000 genomes]
rs2037712	1.00[AFR][1000 genomes]
rs41290722	0.95[EUR][1000 genomes]
rs4309287	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4540958	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4884236	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4884237	0.98[ASN][1000 genomes]
rs4885927	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4885928	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4885929	0.98[ASN][1000 genomes]
rs4911035	1.00[AFR][1000 genomes]
rs4911085	1.00[AFR][1000 genomes]
rs4911086	1.00[AFR][1000 genomes]
rs56767873	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57015316	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57722725	0.86[EUR][1000 genomes]
rs57941830	1.00[EUR][1000 genomes]
rs58163727	1.00[AFR][1000 genomes]
rs60259051	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60573500	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60922106	1.00[AFR][1000 genomes]
rs6563402	0.95[EUR][1000 genomes]
rs67944185	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949402	chr13:84675752-85606846	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv456046	chr13:84971270-85262508	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv562561	chr13:84971270-85262508	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv900691	chr13:85206473-85294881	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv1851778	chr13:85206473-85299207	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv900692	chr13:85218788-85294881	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv900693	chr13:85226116-85291768	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv900694	chr13:85226116-85344527	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:85259400-85261200	Weak transcription	Pancreas	Pancrea

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