Variant report

Variant	rs6563402
Chromosome Location	chr13:85133543-85133544
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs12431069	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1374425	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17078360	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17324250	1.00[EUR][1000 genomes]
rs41290722	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4309287	0.95[EUR][1000 genomes]
rs4456395	0.95[EUR][1000 genomes]
rs4540958	0.95[EUR][1000 genomes]
rs4884236	0.95[EUR][1000 genomes]
rs4885927	0.95[EUR][1000 genomes]
rs4885928	0.95[EUR][1000 genomes]
rs56767873	0.95[EUR][1000 genomes]
rs57015316	0.95[EUR][1000 genomes]
rs57722725	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs57941830	0.95[EUR][1000 genomes]
rs60259051	0.95[EUR][1000 genomes]
rs60573500	0.95[EUR][1000 genomes]
rs7986101	0.90[ASN][1000 genomes]
rs8002953	0.92[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949402	chr13:84675752-85606846	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv456046	chr13:84971270-85262508	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv562561	chr13:84971270-85262508	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv832666	chr13:85028182-85193796	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:85104400-85135000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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