Variant report
| Variant | rs60573500 |
|---|---|
| Chromosome Location | chr13:85274138-85274139 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:28)
| rs_ID | r2[population] |
|---|---|
| rs11841820 | 0.98[ASN][1000 genomes] |
| rs12431069 | 0.86[EUR][1000 genomes] |
| rs1374425 | 0.95[EUR][1000 genomes] |
| rs17078360 | 0.95[EUR][1000 genomes] |
| rs17324250 | 0.95[EUR][1000 genomes] |
| rs1917891 | 1.00[AFR][1000 genomes];0.88[AMR][1000 genomes] |
| rs2037712 | 1.00[AFR][1000 genomes] |
| rs41290722 | 0.95[EUR][1000 genomes] |
| rs4309287 | 1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs4456395 | 1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4540958 | 1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs4884236 | 1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs4884237 | 0.98[ASN][1000 genomes] |
| rs4885927 | 1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs4885928 | 1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs4885929 | 0.98[ASN][1000 genomes] |
| rs4911035 | 1.00[AFR][1000 genomes] |
| rs4911085 | 1.00[AFR][1000 genomes] |
| rs4911086 | 1.00[AFR][1000 genomes] |
| rs56767873 | 1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs57015316 | 1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs57722725 | 0.86[EUR][1000 genomes] |
| rs57941830 | 1.00[EUR][1000 genomes] |
| rs58163727 | 1.00[AFR][1000 genomes] |
| rs60259051 | 1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs60922106 | 1.00[AFR][1000 genomes] |
| rs6563402 | 0.95[EUR][1000 genomes] |
| rs67944185 | 0.98[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv949402 | chr13:84675752-85606846 | Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 2 | nsv900691 | chr13:85206473-85294881 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 3 | esv1851778 | chr13:85206473-85299207 | Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 4 | nsv900692 | chr13:85218788-85294881 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 5 | nsv900693 | chr13:85226116-85291768 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 6 | nsv900694 | chr13:85226116-85344527 | Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr13:85268200-85274600 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
