Variant report
| Variant | rs4885927 |
|---|---|
| Chromosome Location | chr13:85214013-85214014 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs11841820 | 1.00[ASN][1000 genomes] |
| rs12431069 | 0.86[EUR][1000 genomes] |
| rs1374425 | 1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs17078360 | 0.95[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs17324250 | 1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs41290722 | 1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs4309287 | 1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs4456395 | 1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs4540958 | 1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs4884236 | 1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4884237 | 1.00[ASN][1000 genomes] |
| rs4885928 | 1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4885929 | 1.00[ASN][1000 genomes] |
| rs56767873 | 1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs57015316 | 1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs57722725 | 0.86[EUR][1000 genomes] |
| rs57941830 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs60259051 | 1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs60573500 | 1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs6563402 | 0.95[EUR][1000 genomes] |
| rs67944185 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv949402 | chr13:84675752-85606846 | Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 2 | nsv456046 | chr13:84971270-85262508 | Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv562561 | chr13:84971270-85262508 | Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 4 | nsv900691 | chr13:85206473-85294881 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 5 | esv1851778 | chr13:85206473-85299207 | Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr13:85210400-85219400 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
