Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs3224	0.88[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3777544	0.81[CEU][hapmap];0.91[GIH][hapmap];0.81[TSI][hapmap];0.81[EUR][1000 genomes]
rs3777554	0.81[GIH][hapmap]
rs3777556	0.81[GIH][hapmap]
rs3798258	0.81[GIH][hapmap]
rs3957316	0.80[EUR][1000 genomes]
rs4254986	0.82[EUR][1000 genomes]
rs4269369	0.80[AFR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4269370	0.82[EUR][1000 genomes]
rs4371841	0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4458685	0.82[EUR][1000 genomes]
rs4537135	0.82[EUR][1000 genomes]
rs56178742	0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56253836	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6458474	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6904888	0.81[GIH][hapmap]
rs6909217	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6942143	0.84[EUR][1000 genomes]
rs7454875	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9349335	0.81[GIH][hapmap]
rs9367228	0.85[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.90[TSI][hapmap];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9369588	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9463147	0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532024	chr6:45475088-45982640	Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv885866	chr6:45825244-45863826	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:45860400-45864400	Weak transcription	Left Ventricle	heart
2	chr6:45860400-45864400	Weak transcription	Right Atrium	heart
3	chr6:45863200-45864200	Enhancers	Right Ventricle	heart
4	chr6:45863400-45865600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr6:45863400-45866800	Weak transcription	Fetal Heart	heart
6	chr6:45863400-45869600	Weak transcription	Sigmoid Colon	Sigmoid Colon

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