Variant report

Variant	rs7454875
Chromosome Location	chr6:45863623-45863624
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1416166	0.85[CEU][hapmap]
rs3224	0.88[CHB][hapmap]
rs4254986	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4269370	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4458685	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4473854	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4537135	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs56253836	0.83[EUR][1000 genomes]
rs6458474	0.82[EUR][1000 genomes]
rs6458478	0.96[CEU][hapmap];0.94[EUR][1000 genomes]
rs6909217	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6942143	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9367228	0.87[CHB][hapmap]
rs9369588	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532024	chr6:45475088-45982640	Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv885866	chr6:45825244-45863826	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:45860400-45864400	Weak transcription	Left Ventricle	heart
2	chr6:45860400-45864400	Weak transcription	Right Atrium	heart
3	chr6:45863200-45864200	Enhancers	Right Ventricle	heart
4	chr6:45863400-45865600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr6:45863400-45866800	Weak transcription	Fetal Heart	heart
6	chr6:45863400-45869600	Weak transcription	Sigmoid Colon	Sigmoid Colon

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links