Variant report

Variant	rs6909217
Chromosome Location	chr6:45865258-45865259
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1416166	0.95[CEU][hapmap]
rs3224	0.83[ASN][1000 genomes]
rs4254986	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4269370	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4371841	0.83[ASN][1000 genomes]
rs4458685	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4473854	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4537135	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs56178742	0.83[ASN][1000 genomes]
rs56253836	0.82[EUR][1000 genomes]
rs6458474	0.82[EUR][1000 genomes]
rs6458478	0.95[CEU][hapmap];0.93[EUR][1000 genomes]
rs6942143	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7454875	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9349335	0.80[CEU][hapmap]
rs9367228	0.81[ASN][1000 genomes]
rs9369588	0.82[EUR][1000 genomes]
rs9463147	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532024	chr6:45475088-45982640	Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:45863400-45865600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr6:45863400-45866800	Weak transcription	Fetal Heart	heart
3	chr6:45863400-45869600	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr6:45864000-45865400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
5	chr6:45864200-45865400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr6:45864200-45865600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr6:45864400-45865400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr6:45864400-45865400	Enhancers	Left Ventricle	heart
9	chr6:45864400-45865400	Enhancers	Right Atrium	heart
10	chr6:45864400-45865600	Enhancers	NHDF-Ad	bronchial
11	chr6:45864600-45865800	Enhancers	Primary monocytes fromperipheralblood	blood
12	chr6:45864800-45867400	Weak transcription	Psoas Muscle	Psoas
13	chr6:45865000-45868400	Weak transcription	Osteobl	bone
14	chr6:45865000-45870000	Weak transcription	Duodenum Mucosa	Duodenum
15	chr6:45865200-45865400	Enhancers	Skeletal Muscle Female	skeletal muscle
16	chr6:45865200-45865600	Enhancers	Right Ventricle	heart
17	chr6:45865200-45867000	Weak transcription	Fetal Intestine Small	intestine
18	chr6:45865200-45870000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr6:45865200-45870000	Weak transcription	HSMMtube	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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