Variant report

Variant	rs56253836
Chromosome Location	chr6:45864584-45864585
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs3224	0.92[EUR][1000 genomes]
rs3777544	0.81[EUR][1000 genomes]
rs4254986	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4269369	0.92[EUR][1000 genomes]
rs4269370	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4371841	0.92[EUR][1000 genomes]
rs4458685	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4473854	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4537135	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs56178742	0.90[EUR][1000 genomes]
rs6458474	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6458478	0.81[ASN][1000 genomes]
rs6909217	0.82[EUR][1000 genomes]
rs6942143	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7454875	0.83[EUR][1000 genomes]
rs9367228	0.92[EUR][1000 genomes]
rs9369588	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9463147	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532024	chr6:45475088-45982640	Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:45863400-45865600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr6:45863400-45866800	Weak transcription	Fetal Heart	heart
3	chr6:45863400-45869600	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr6:45864000-45865400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
5	chr6:45864200-45865000	Enhancers	Osteobl	bone
6	chr6:45864200-45865200	Weak transcription	Right Ventricle	heart
7	chr6:45864200-45865400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr6:45864200-45865600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr6:45864400-45864600	Enhancers	Psoas Muscle	Psoas
10	chr6:45864400-45865200	Enhancers	HSMMtube	muscle
11	chr6:45864400-45865400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr6:45864400-45865400	Enhancers	Left Ventricle	heart
13	chr6:45864400-45865400	Enhancers	Right Atrium	heart
14	chr6:45864400-45865600	Enhancers	NHDF-Ad	bronchial

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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