Variant report

Variant	rs450420
Chromosome Location	chr14:69186454-69186455
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:69177353..69180926-chr14:69182112..69186555,4	MCF-7	breast:
2	chr14:69185841..69187521-chr14:69260406..69261940,2	K562	blood:
3	chr14:69185847..69187659-chr14:69204580..69206147,2	K562	blood:
4	chr14:69183888..69188009-chr14:69213725..69217312,4	K562	blood:
5	chr14:69181127..69183610-chr14:69184552..69186676,3	K562	blood:
6	chr14:69185412..69187789-chr14:69192194..69193757,2	MCF-7	breast:
7	chr14:69027252..69028985-chr14:69183923..69186800,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000185650	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1275049	0.82[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs168966	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs194722	1.00[ASW][hapmap]
rs194771	1.00[GIH][hapmap];0.88[MEX][hapmap];0.92[TSI][hapmap]
rs194785	1.00[GIH][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap]
rs438354	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7151054	1.00[MEX][hapmap]

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69173600-69194200	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr14:69173600-69196400	Weak transcription	Right Ventricle	heart
3	chr14:69176600-69189400	Weak transcription	Pancreas	Pancrea
4	chr14:69181000-69191400	Weak transcription	Fetal Muscle Trunk	muscle
5	chr14:69181000-69195200	Weak transcription	Spleen	Spleen
6	chr14:69182000-69202600	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr14:69182200-69191200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr14:69184200-69188600	Weak transcription	Placenta	Placenta
9	chr14:69184400-69187600	Weak transcription	Fetal Intestine Small	intestine
10	chr14:69184400-69188400	Weak transcription	Fetal Intestine Large	intestine
11	chr14:69184800-69187000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
12	chr14:69184800-69188800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr14:69185000-69187200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
14	chr14:69185200-69186600	Enhancers	Monocytes-CD14+_RO01746	blood
15	chr14:69185200-69186800	Enhancers	K562	blood
16	chr14:69185200-69187000	Enhancers	Primary T helper cells PMA-I stimulated	--
17	chr14:69185200-69187200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
18	chr14:69185200-69187400	Enhancers	Primary T killer memory cells from peripheral blood	blood
19	chr14:69185400-69187200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
20	chr14:69185600-69187200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
21	chr14:69185800-69187200	Weak transcription	Primary T cells fromperipheralblood	blood
22	chr14:69185800-69188400	Weak transcription	HepG2	liver
23	chr14:69186000-69187000	Enhancers	Primary T helper naive cells from peripheral blood	blood
24	chr14:69186200-69186800	Enhancers	Primary T cells from cord blood	blood
25	chr14:69186200-69186800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
26	chr14:69186200-69187400	Enhancers	Primary T helper cells fromperipheralblood	blood

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