Variant report

Variant	rs4507885
Chromosome Location	chr9:101317924-101317925
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10819042	1.00[CEU][hapmap];0.83[YRI][hapmap];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10986744	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];0.82[LWK][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap];0.90[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11999209	0.94[EUR][1000 genomes]
rs12347864	1.00[ASW][hapmap];1.00[CEU][hapmap];0.82[LWK][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];0.90[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16917159	1.00[CEU][hapmap]
rs2225559	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs28458297	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs28546491	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2900512	0.86[YRI][hapmap];0.80[AFR][1000 genomes]
rs57488751	0.83[EUR][1000 genomes]
rs61233819	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61565750	1.00[AMR][1000 genomes]
rs6478743	1.00[CHD][hapmap]
rs7044171	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7045028	0.95[YRI][hapmap];1.00[AMR][1000 genomes]
rs73655490	0.83[EUR][1000 genomes]
rs7857537	0.83[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];0.84[MKK][hapmap];0.95[YRI][hapmap];1.00[AMR][1000 genomes]
rs7876036	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430085	chr9:100928245-101339645	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv831665	chr9:101170061-101367692	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv614936	chr9:101182698-101680380	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
4	nsv6633	chr9:101308371-101342811	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101314400-101326400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr9:101314600-101320800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr9:101315200-101320400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr9:101315400-101318400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr9:101315600-101318000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr9:101317800-101318800	Enhancers	Cortex derived primary cultured neurospheres	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links