Variant report

Variant	rs61565750
Chromosome Location	chr9:101300963-101300964
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10819042	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10986744	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11999209	0.84[EUR][1000 genomes]
rs12347864	1.00[AMR][1000 genomes]
rs2225559	1.00[AMR][1000 genomes]
rs28458297	0.83[AMR][1000 genomes]
rs28546491	1.00[AMR][1000 genomes]
rs35449008	1.00[EUR][1000 genomes]
rs4507885	1.00[AMR][1000 genomes]
rs57488751	0.95[EUR][1000 genomes]
rs61233819	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7044171	1.00[AMR][1000 genomes]
rs7045028	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73655489	1.00[EUR][1000 genomes]
rs73655490	0.95[EUR][1000 genomes]
rs7857537	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7876036	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430085	chr9:100928245-101339645	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv831665	chr9:101170061-101367692	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv614936	chr9:101182698-101680380	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101295800-101302400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr9:101298400-101304400	Weak transcription	Right Atrium	heart
3	chr9:101299400-101303000	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr9:101300400-101302400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr9:101300600-101301400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
6	chr9:101300600-101301800	Enhancers	Fetal Brain Male	brain
7	chr9:101300800-101301400	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr9:101300800-101301600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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