Variant report

Variant	rs7876036
Chromosome Location	chr9:101300129-101300130
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:101299953..101302542-chr9:101304588..101306408,2	MCF-7	breast:
2	chr9:101299271..101301667-chr9:101338837..101340392,2	K562	blood:
3	chr9:101292076..101295692-chr9:101296548..101300334,3	MCF-7	breast:
4	chr9:101085806..101088798-chr9:101299467..101301907,2	K562	blood:
5	chr9:101299125..101300704-chr9:101305712..101307766,2	K562	blood:
6	chr9:101289571..101291142-chr9:101298750..101301335,2	MCF-7	breast:
7	chr9:101299271..101301667-chr9:101337851..101340392,3	K562	blood:
8	chr9:101297663..101300259-chr9:101312178..101315523,3	MCF-7	breast:
9	chr9:101295391..101297834-chr9:101299775..101301545,2	MCF-7	breast:
10	chr9:101299080..101300236-chr9:101537381..101538784,5	K562	blood:

No data

No data

No data

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10819042	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10986744	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11999209	0.84[EUR][1000 genomes]
rs12347864	1.00[AMR][1000 genomes]
rs2225559	1.00[AMR][1000 genomes]
rs28458297	0.83[AMR][1000 genomes]
rs28546491	1.00[AMR][1000 genomes]
rs35449008	1.00[EUR][1000 genomes]
rs4507885	1.00[AMR][1000 genomes]
rs57488751	0.95[EUR][1000 genomes]
rs61233819	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61565750	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7044171	1.00[AMR][1000 genomes]
rs7045028	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73655489	1.00[EUR][1000 genomes]
rs73655490	0.95[EUR][1000 genomes]
rs7857537	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430085	chr9:100928245-101339645	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv831665	chr9:101170061-101367692	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv614936	chr9:101182698-101680380	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101295800-101302400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr9:101298400-101304400	Weak transcription	Right Atrium	heart
3	chr9:101299400-101303000	Enhancers	Cortex derived primary cultured neurospheres	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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