Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:101292076..101295692-chr9:101296548..101300334,3	MCF-7	breast:
2	chr9:101297663..101300259-chr9:101312178..101315523,3	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10819042	1.00[CEU][hapmap];0.88[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10986744	0.83[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];0.85[YRI][hapmap];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11999209	0.84[EUR][1000 genomes]
rs12347864	0.83[ASW][hapmap];1.00[CEU][hapmap];0.85[YRI][hapmap];1.00[AMR][1000 genomes]
rs16917159	1.00[CEU][hapmap]
rs2225559	1.00[AMR][1000 genomes]
rs28458297	0.83[AMR][1000 genomes]
rs28546491	1.00[AMR][1000 genomes]
rs2900512	0.82[YRI][hapmap]
rs35449008	1.00[EUR][1000 genomes]
rs4507885	0.83[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];0.84[MKK][hapmap];0.95[YRI][hapmap];1.00[AMR][1000 genomes]
rs57488751	0.95[EUR][1000 genomes]
rs61233819	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61565750	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6478743	1.00[CHD][hapmap]
rs7044171	1.00[AMR][1000 genomes]
rs7045028	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73655489	1.00[EUR][1000 genomes]
rs73655490	0.95[EUR][1000 genomes]
rs7876036	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430085	chr9:100928245-101339645	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv831665	chr9:101170061-101367692	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv614936	chr9:101182698-101680380	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101295800-101302400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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