Variant report

Variant	rs4515296
Chromosome Location	chr5:124247411-124247412
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10072144	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4240382	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4441871	0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4458563	0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4530753	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4596380	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4836126	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4836128	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6595560	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6595563	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6867388	0.95[EUR][1000 genomes]
rs6871433	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6881509	0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6889956	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7701121	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7707774	0.93[ASN][1000 genomes]
rs7735284	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8180492	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:124242600-124248000	Weak transcription	Primary B cells from peripheral blood	blood
2	chr5:124242800-124248600	Enhancers	Brain Substantia Nigra	brain
3	chr5:124243000-124248600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr5:124243000-124248600	Weak transcription	Primary B cells from cord blood	blood
5	chr5:124244800-124248800	Weak transcription	Left Ventricle	heart
6	chr5:124245400-124249000	Enhancers	GM12878-XiMat	blood
7	chr5:124245800-124248400	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr5:124245800-124248400	Weak transcription	Dnd41	blood
9	chr5:124245800-124248600	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr5:124246000-124254200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr5:124246600-124248800	Weak transcription	Ovary	ovary
12	chr5:124246800-124248200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr5:124246800-124248200	Weak transcription	Psoas Muscle	Psoas
14	chr5:124247000-124249600	Enhancers	Breast Myoepithelial Primary Cells	Breast
15	chr5:124247200-124249400	Enhancers	Primary monocytes fromperipheralblood	blood
16	chr5:124247400-124247600	Enhancers	Skeletal Muscle Female	skeletal muscle
17	chr5:124247400-124248000	Enhancers	Monocytes-CD14+_RO01746	blood
18	chr5:124247400-124248600	Weak transcription	Brain Hippocampus Middle	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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