Variant report

Variant	rs7707774
Chromosome Location	chr5:124288960-124288961
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10072144	1.00[ASN][1000 genomes]
rs4240382	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4441871	0.88[ASN][1000 genomes]
rs4458563	0.88[ASN][1000 genomes]
rs4515296	0.93[ASN][1000 genomes]
rs4530753	0.88[ASN][1000 genomes]
rs4596380	1.00[ASN][1000 genomes]
rs4836126	0.88[ASN][1000 genomes]
rs4836128	1.00[ASN][1000 genomes]
rs6595560	0.88[ASN][1000 genomes]
rs6595563	1.00[ASN][1000 genomes]
rs6867388	0.83[ASN][1000 genomes]
rs6871433	0.83[ASN][1000 genomes]
rs6881509	0.88[ASN][1000 genomes]
rs6889956	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7701121	1.00[ASN][1000 genomes]
rs7735284	0.88[ASN][1000 genomes]
rs8180492	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882822	chr5:124250018-124449375	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv830474	chr5:124263628-124431299	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv599657	chr5:124284253-124330522	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7707774	ZNF608	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:124284200-124301800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr5:124284800-124294000	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr5:124285600-124292000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr5:124287600-124297800	Weak transcription	Adipose Nuclei	Adipose
5	chr5:124287800-124289200	Enhancers	Psoas Muscle	Psoas
6	chr5:124288000-124292600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr5:124288800-124289000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr5:124288800-124289000	Enhancers	GM12878-XiMat	blood
9	chr5:124288800-124298800	Weak transcription	Primary B cells from cord blood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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