Variant report

Variant	rs4836126
Chromosome Location	chr5:124269766-124269767
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10035500	0.80[ASN][1000 genomes]
rs10072144	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11241778	0.89[ASN][1000 genomes]
rs4240382	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4441871	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4458563	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4515296	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4530753	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4596380	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4836127	0.80[ASN][1000 genomes]
rs4836128	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6595560	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6595563	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6867388	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6871433	0.95[EUR][1000 genomes]
rs6881509	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6889956	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7701121	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7707774	0.88[ASN][1000 genomes]
rs7735284	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8180492	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882822	chr5:124250018-124449375	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv830474	chr5:124263628-124431299	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4836126	ZNF608	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:124259200-124270800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr5:124259600-124270400	Weak transcription	Primary B cells from cord blood	blood
3	chr5:124264000-124271400	Weak transcription	HSMM	muscle
4	chr5:124269000-124271600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr5:124269000-124271600	Weak transcription	HMEC	breast
6	chr5:124269200-124270600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr5:124269200-124270800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr5:124269200-124270800	Weak transcription	Pancreas	Pancrea
9	chr5:124269200-124270800	Weak transcription	NH-A	brain
10	chr5:124269200-124271200	Weak transcription	Right Atrium	heart
11	chr5:124269200-124271600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr5:124269200-124271600	Weak transcription	NHEK	skin
13	chr5:124269400-124270600	Weak transcription	Colon Smooth Muscle	Colon
14	chr5:124269600-124270000	Weak transcription	Rectal Smooth Muscle	rectum

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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