Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10035500	0.80[ASN][1000 genomes]
rs10072144	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11241778	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4240382	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4441871	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4458563	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4515296	0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4530753	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4596380	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4836126	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4836127	0.80[ASN][1000 genomes]
rs4836128	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6595560	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6595563	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6867388	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6871433	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6889956	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7701121	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7707774	0.88[ASN][1000 genomes]
rs7735284	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8180492	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882822	chr5:124250018-124449375	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv830474	chr5:124263628-124431299	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:124259200-124270800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr5:124259600-124270400	Weak transcription	Primary B cells from cord blood	blood
3	chr5:124264000-124271400	Weak transcription	HSMM	muscle
4	chr5:124264600-124268600	Weak transcription	HMEC	breast
5	chr5:124266800-124268600	Weak transcription	Rectal Smooth Muscle	rectum
6	chr5:124268200-124269000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr5:124268200-124269200	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr5:124268200-124269200	Enhancers	Fetal Stomach	stomach
9	chr5:124268200-124269400	Enhancers	Colon Smooth Muscle	Colon
10	chr5:124268400-124268800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr5:124268400-124269200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr5:124268400-124269200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr5:124268400-124269200	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr5:124268400-124269200	Enhancers	Liver	Liver
15	chr5:124268400-124269200	Enhancers	Pancreas	Pancrea
16	chr5:124268400-124269200	Enhancers	NHEK	skin

Quick Search: