Variant report

Variant	rs453451
Chromosome Location	chr6:14957882-14957883
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs13206822	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1747512	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2147203	0.88[EUR][1000 genomes]
rs2327870	0.82[EUR][1000 genomes]
rs413064	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs425274	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs432518	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs446638	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs448266	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs453850	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4712244	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4715939	0.81[EUR][1000 genomes]
rs4715940	0.81[EUR][1000 genomes]
rs4715941	0.81[EUR][1000 genomes]
rs4715951	0.86[EUR][1000 genomes]
rs4715952	0.89[EUR][1000 genomes]
rs6902553	0.89[EUR][1000 genomes]
rs6918145	0.89[EUR][1000 genomes]
rs7741200	0.88[EUR][1000 genomes]
rs7750114	0.88[EUR][1000 genomes]
rs7753140	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs863908	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9349963	0.87[EUR][1000 genomes]
rs9367854	0.87[EUR][1000 genomes]
rs9370788	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9383005	0.81[EUR][1000 genomes]
rs9383006	0.90[EUR][1000 genomes]
rs9396541	0.85[EUR][1000 genomes]
rs9396542	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9396544	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031668	chr6:14774036-15044308	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv538138	chr6:14774036-15044308	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv883453	chr6:14926320-15001506	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:14933600-14964800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr6:14933800-14969600	Weak transcription	Right Atrium	heart
3	chr6:14946600-14965000	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr6:14954000-14959400	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr6:14956200-14959000	Enhancers	Primary neutrophils fromperipheralblood	blood
6	chr6:14957400-14959600	Enhancers	GM12878-XiMat	blood
7	chr6:14957600-14958000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
8	chr6:14957600-14958200	Enhancers	Primary B cells from peripheral blood	blood
9	chr6:14957600-14958600	Enhancers	Primary B cells from cord blood	blood
10	chr6:14957600-14964800	Weak transcription	H1 Cell Line	embryonic stem cell

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