Variant report

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1259064	0.86[EUR][1000 genomes]
rs1259065	0.85[EUR][1000 genomes]
rs1259066	0.83[EUR][1000 genomes]
rs1259071	0.81[EUR][1000 genomes]
rs1259072	0.80[EUR][1000 genomes]
rs1747512	0.90[EUR][1000 genomes]
rs2147203	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2327870	0.92[EUR][1000 genomes]
rs425274	0.88[EUR][1000 genomes]
rs432518	0.90[EUR][1000 genomes]
rs446638	0.89[EUR][1000 genomes]
rs448266	0.89[EUR][1000 genomes]
rs453451	0.90[EUR][1000 genomes]
rs453850	0.89[EUR][1000 genomes]
rs4712244	0.89[EUR][1000 genomes]
rs4715951	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4715952	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs67121944	0.88[EUR][1000 genomes]
rs6902553	0.80[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6918145	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7741200	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7750114	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7753140	0.90[EUR][1000 genomes]
rs863908	0.88[EUR][1000 genomes]
rs9367854	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9370788	0.90[EUR][1000 genomes]
rs9396542	0.89[EUR][1000 genomes]
rs9396544	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9396547	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031668	chr6:14774036-15044308	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv538138	chr6:14774036-15044308	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv883453	chr6:14926320-15001506	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:14968600-14986400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:14973200-14975400	Weak transcription	Monocytes-CD14+_RO01746	blood
3	chr6:14973400-14975200	Weak transcription	Primary monocytes fromperipheralblood	blood
4	chr6:14974400-14976000	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr6:14974400-14976200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr6:14974600-14975600	Enhancers	K562	blood
7	chr6:14974600-14976000	Enhancers	H1 Cell Line	embryonic stem cell
8	chr6:14974600-14976000	Enhancers	H9 Cell Line	embryonic stem cell
9	chr6:14974600-14976000	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr6:14974600-14976000	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr6:14974600-14976000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr6:14974800-14975600	Enhancers	Fetal Heart	heart
13	chr6:14975000-14975800	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr6:14975000-14976000	Enhancers	ES-I3 Cell Line	embryonic stem cell

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