Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:14987677..14990288-chr6:14994527..14997197,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1259064	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1259065	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1259066	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1259071	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1259072	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1747512	0.82[EUR][1000 genomes]
rs2147203	0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs425274	0.81[EUR][1000 genomes]
rs432518	0.82[EUR][1000 genomes]
rs446638	0.81[EUR][1000 genomes]
rs448266	0.81[EUR][1000 genomes]
rs453451	0.82[EUR][1000 genomes]
rs453850	0.81[EUR][1000 genomes]
rs4712244	0.82[EUR][1000 genomes]
rs4715951	0.88[EUR][1000 genomes]
rs4715952	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs67121944	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6902553	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6918145	0.92[EUR][1000 genomes]
rs7741200	0.94[EUR][1000 genomes]
rs7750114	0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7753140	0.82[EUR][1000 genomes]
rs863908	0.82[EUR][1000 genomes]
rs927628	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9367854	0.92[EUR][1000 genomes]
rs9370788	0.82[EUR][1000 genomes]
rs9383006	0.92[EUR][1000 genomes]
rs9383008	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9396542	0.81[EUR][1000 genomes]
rs9396544	0.88[EUR][1000 genomes]
rs9396547	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031668	chr6:14774036-15044308	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv538138	chr6:14774036-15044308	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv883453	chr6:14926320-15001506	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv981299	chr6:14990645-14997807	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:14976000-15006400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr6:14984600-15006600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr6:14985000-14995000	Weak transcription	K562	blood
4	chr6:14985000-15001600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr6:14985000-15003800	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr6:14985200-15006000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr6:14985600-15003800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr6:14986600-15018000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr6:14992400-14997400	Strong transcription	HUES6 Cell Line	embryonic stem cell
10	chr6:14992600-14997400	Strong transcription	H9 Cell Line	embryonic stem cell
11	chr6:14993200-14996000	Strong transcription	HUES48 Cell Line	embryonic stem cell
12	chr6:14993600-14994800	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr6:14993600-15007200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
14	chr6:14994600-14994800	Active TSS	Small Intestine	intestine
15	chr6:14994600-14997600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell

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