Variant report

Variant	rs4556855
Chromosome Location	chr17:66815068-66815069
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1443259	0.94[EUR][1000 genomes]
rs1443263	0.85[EUR][1000 genomes]
rs1470294	0.90[EUR][1000 genomes]
rs1550646	0.93[EUR][1000 genomes]
rs1808919	0.96[EUR][1000 genomes]
rs1838100	0.94[EUR][1000 genomes]
rs1867235	0.96[EUR][1000 genomes]
rs1899576	0.87[EUR][1000 genomes]
rs1978962	0.90[EUR][1000 genomes]
rs4968962	0.96[EUR][1000 genomes]
rs6501766	0.96[EUR][1000 genomes]
rs6501767	0.96[EUR][1000 genomes]
rs6501768	0.96[EUR][1000 genomes]
rs6501799	0.81[EUR][1000 genomes]
rs8078168	0.90[EUR][1000 genomes]
rs8082619	0.93[EUR][1000 genomes]
rs894593	0.97[EUR][1000 genomes]
rs980423	0.90[EUR][1000 genomes]
rs9895868	0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067334	chr17:66695039-67221585	Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
2	nsv543411	chr17:66695039-67221585	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
3	nsv575927	chr17:66787428-66817866	Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv908694	chr17:66802992-66913936	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:66806000-66817200	Weak transcription	Ovary	ovary
2	chr17:66809800-66817000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr17:66811600-66816000	Enhancers	Fetal Muscle Leg	muscle
4	chr17:66811800-66817000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr17:66812200-66817200	Weak transcription	Right Atrium	heart
6	chr17:66813400-66816200	Enhancers	HepG2	liver
7	chr17:66814000-66815200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr17:66814400-66817200	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr17:66814600-66817000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr17:66814600-66817200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr17:66814800-66815600	Enhancers	Brain Hippocampus Middle	brain
12	chr17:66814800-66816600	Enhancers	Brain Cingulate Gyrus	brain
13	chr17:66814800-66817600	Enhancers	Brain Inferior Temporal Lobe	brain
14	chr17:66814800-66818600	Enhancers	Liver	Liver
15	chr17:66815000-66816200	Enhancers	Brain Substantia Nigra	brain
16	chr17:66815000-66817200	Weak transcription	NHDF-Ad	bronchial
17	chr17:66815000-66817600	Weak transcription	Fetal Lung	lung
18	chr17:66815000-66817800	Weak transcription	Adipose Nuclei	Adipose

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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