Variant report

Variant	rs6501767
Chromosome Location	chr17:66818773-66818774
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:66808533..66810777-chr17:66816260..66818804,2	K562	blood:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs1373066	0.92[AMR][1000 genomes]
rs1443259	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1443261	0.89[AMR][1000 genomes]
rs1443262	0.94[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1443263	0.88[EUR][1000 genomes]
rs1470292	0.92[AMR][1000 genomes]
rs1470293	0.92[AMR][1000 genomes]
rs1470294	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1550646	0.97[EUR][1000 genomes]
rs1808919	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1838100	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1838101	0.94[AMR][1000 genomes]
rs1867235	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1899576	0.91[EUR][1000 genomes]
rs1978962	0.94[EUR][1000 genomes]
rs2218350	0.92[AMR][1000 genomes]
rs4246431	0.89[AMR][1000 genomes]
rs4556855	0.96[EUR][1000 genomes]
rs4968826	0.86[AMR][1000 genomes]
rs4968962	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6501766	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6501768	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6501799	0.85[EUR][1000 genomes]
rs6501813	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6501835	0.92[AMR][1000 genomes]
rs6501839	0.92[AMR][1000 genomes]
rs7209220	0.81[AMR][1000 genomes]
rs7210022	0.81[AMR][1000 genomes]
rs7211979	0.83[AMR][1000 genomes]
rs8068204	0.81[AMR][1000 genomes]
rs8074944	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs8078168	0.94[EUR][1000 genomes]
rs8080098	0.92[AMR][1000 genomes]
rs8082619	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs894593	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs894594	0.92[AMR][1000 genomes]
rs980423	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9895868	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067334	chr17:66695039-67221585	Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
2	nsv543411	chr17:66695039-67221585	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
3	nsv908694	chr17:66802992-66913936	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:66816600-66819200	Enhancers	NHLF	lung
2	chr17:66816800-66819400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr17:66816800-66819400	Enhancers	NH-A	brain
4	chr17:66817000-66818800	Enhancers	Brain Cingulate Gyrus	brain
5	chr17:66817000-66818800	Enhancers	HSMMtube	muscle
6	chr17:66817000-66819000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr17:66817000-66819000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr17:66817000-66819000	Enhancers	Hela-S3	cervix
9	chr17:66817000-66819200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr17:66817000-66819200	Enhancers	HMEC	breast
11	chr17:66817000-66819400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr17:66817000-66819400	Enhancers	HUVEC	blood vessel
13	chr17:66817000-66819800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr17:66817000-66819800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
15	chr17:66817200-66818800	Enhancers	HSMM	muscle
16	chr17:66817200-66819000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr17:66817200-66819200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr17:66817200-66819200	Enhancers	NHDF-Ad	bronchial
19	chr17:66817200-66819400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr17:66817200-66819800	Enhancers	Fetal Muscle Leg	muscle
21	chr17:66817400-66818800	Enhancers	Fetal Heart	heart
22	chr17:66817400-66818800	Enhancers	Osteobl	bone
23	chr17:66817600-66818800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr17:66817600-66819000	Enhancers	NHEK	skin
25	chr17:66817600-66828800	Weak transcription	Right Atrium	heart
26	chr17:66817800-66819000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr17:66818000-66818800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr17:66818000-66818800	Enhancers	Skeletal Muscle Female	skeletal muscle
29	chr17:66818200-66819200	Enhancers	A549	lung
30	chr17:66818400-66819200	Weak transcription	Placenta	Placenta
31	chr17:66818600-66818800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr17:66818600-66818800	Enhancers	Psoas Muscle	Psoas
33	chr17:66818600-66819000	Enhancers	Muscle Satellite Cultured Cells	--
34	chr17:66818600-66819200	Weak transcription	Adipose Nuclei	Adipose
35	chr17:66818600-66820600	Flanking Active TSS	Liver	Liver
36	chr17:66818600-66821400	Enhancers	HepG2	liver
37	chr17:66818600-66825600	Weak transcription	Fetal Lung	lung

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