Variant report

Variant	rs9895868
Chromosome Location	chr17:66819439-66819440
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs1373066	0.92[AMR][1000 genomes]
rs1443259	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1443261	0.89[AMR][1000 genomes]
rs1443262	0.94[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1443263	0.88[EUR][1000 genomes]
rs1470292	0.92[AMR][1000 genomes]
rs1470293	0.92[AMR][1000 genomes]
rs1470294	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1550646	0.97[EUR][1000 genomes]
rs1808919	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1838100	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1838101	0.94[AMR][1000 genomes]
rs1867235	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1899576	0.91[EUR][1000 genomes]
rs1978962	0.94[EUR][1000 genomes]
rs2218350	0.92[AMR][1000 genomes]
rs4246431	0.89[AMR][1000 genomes]
rs4556855	0.96[EUR][1000 genomes]
rs4968826	0.86[AMR][1000 genomes]
rs4968962	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6501766	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6501767	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6501768	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6501799	0.85[EUR][1000 genomes]
rs6501813	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6501835	0.92[AMR][1000 genomes]
rs6501839	0.92[AMR][1000 genomes]
rs7209220	0.81[AMR][1000 genomes]
rs7210022	0.81[AMR][1000 genomes]
rs7211979	0.83[AMR][1000 genomes]
rs8068204	0.81[AMR][1000 genomes]
rs8074944	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs8078168	0.94[EUR][1000 genomes]
rs8080098	0.92[AMR][1000 genomes]
rs8082619	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs894593	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs894594	0.92[AMR][1000 genomes]
rs980423	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067334	chr17:66695039-67221585	Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
2	nsv543411	chr17:66695039-67221585	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
3	nsv908694	chr17:66802992-66913936	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:66817000-66819800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr17:66817000-66819800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
3	chr17:66817200-66819800	Enhancers	Fetal Muscle Leg	muscle
4	chr17:66817600-66828800	Weak transcription	Right Atrium	heart
5	chr17:66818600-66820600	Flanking Active TSS	Liver	Liver
6	chr17:66818600-66821400	Enhancers	HepG2	liver
7	chr17:66818600-66825600	Weak transcription	Fetal Lung	lung
8	chr17:66818800-66819600	Weak transcription	Psoas Muscle	Psoas
9	chr17:66818800-66819800	Weak transcription	Fetal Heart	heart
10	chr17:66819200-66820200	Active TSS	Adipose Nuclei	Adipose
11	chr17:66819400-66826600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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