Variant report

Variant	rs4556957
Chromosome Location	chr2:33886223-33886224
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10188211	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12471027	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13001536	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2012014	0.94[ASN][1000 genomes]
rs2367817	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6543727	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6717058	0.96[ASN][1000 genomes]
rs6757910	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7569329	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3350238	chr2:33849408-33979026	Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv963221	chr2:33877828-33892244	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:33880600-33895800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr2:33880800-33888600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr2:33886000-33887400	Enhancers	Placenta	Placenta

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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