Variant report

Variant	rs13001536
Chromosome Location	chr2:33877544-33877545
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10180232	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10185437	0.91[ASN][1000 genomes]
rs10188211	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10514775	0.88[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs12471027	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13030968	0.88[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs13397381	0.91[ASN][1000 genomes]
rs1947179	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs2004037	0.91[ASN][1000 genomes]
rs2367817	0.82[EUR][1000 genomes]
rs35909307	0.88[ASN][1000 genomes]
rs4556957	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4627543	0.88[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs59479233	0.91[ASN][1000 genomes]
rs60739635	0.83[ASN][1000 genomes]
rs62147461	0.97[ASN][1000 genomes]
rs62147464	0.97[ASN][1000 genomes]
rs62147465	0.97[ASN][1000 genomes]
rs62149034	0.88[ASN][1000 genomes]
rs62150475	0.91[ASN][1000 genomes]
rs62150505	0.91[ASN][1000 genomes]
rs62150506	0.91[ASN][1000 genomes]
rs62150508	0.91[ASN][1000 genomes]
rs6708	1.00[JPT][hapmap]
rs6713874	0.84[EUR][1000 genomes]
rs6742257	0.88[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs6746691	0.88[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs6757910	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72785990	0.88[ASN][1000 genomes]
rs7561151	0.85[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs7586013	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7588728	0.88[ASN][1000 genomes]
rs7593383	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3350238	chr2:33849408-33979026	Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:33869800-33878000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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