Variant report
| Variant | rs7586013 |
|---|---|
| Chromosome Location | chr2:33882145-33882146 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:28)
| rs_ID | r2[population] |
|---|---|
| rs10180232 | 0.84[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs10185437 | 0.89[ASN][1000 genomes] |
| rs10188211 | 0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs11124326 | 0.82[EUR][1000 genomes] |
| rs12471027 | 0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs13001536 | 0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs13030968 | 0.83[ASN][1000 genomes] |
| rs13397381 | 0.89[ASN][1000 genomes] |
| rs1947179 | 0.89[ASN][1000 genomes] |
| rs2004037 | 0.89[ASN][1000 genomes] |
| rs35909307 | 0.86[ASN][1000 genomes] |
| rs4627543 | 0.89[ASN][1000 genomes] |
| rs59479233 | 0.89[ASN][1000 genomes] |
| rs60739635 | 0.80[ASN][1000 genomes] |
| rs62147461 | 0.94[ASN][1000 genomes] |
| rs62147464 | 0.94[ASN][1000 genomes] |
| rs62147465 | 0.94[ASN][1000 genomes] |
| rs62149034 | 0.86[ASN][1000 genomes] |
| rs62150475 | 0.89[ASN][1000 genomes] |
| rs62150505 | 0.89[ASN][1000 genomes] |
| rs62150506 | 0.89[ASN][1000 genomes] |
| rs62150508 | 0.89[ASN][1000 genomes] |
| rs6746691 | 0.89[ASN][1000 genomes] |
| rs6757910 | 0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs72785990 | 0.86[ASN][1000 genomes] |
| rs7561151 | 0.89[ASN][1000 genomes] |
| rs7588728 | 0.86[ASN][1000 genomes] |
| rs7593383 | 0.83[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3350238 | chr2:33849408-33979026 | Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 2 | nsv963221 | chr2:33877828-33892244 | Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS | n/a | n/a | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:33880600-33895800 | Weak transcription | iPS DF 6.9 Cell Line | embryonic stem cell |
| 2 | chr2:33880800-33888600 | Weak transcription | ES-UCSF4 Cell Line | embryonic stem cell |
