Variant report

Variant	rs7561151
Chromosome Location	chr2:33819393-33819394
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:33810447..33812051-chr2:33818022..33820406,2	MCF-7	breast:
2	chr2:33817150..33820639-chr2:33822633..33825904,4	K562	blood:
3	chr2:33817700..33820803-chr2:33822852..33825201,5	MCF-7	breast:
4	chr2:33813884..33820375-chr2:33821086..33825904,10	K562	blood:
5	chr2:33817798..33820149-chr2:33821792..33824731,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000119812	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10180232	0.91[ASN][1000 genomes]
rs10185437	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10188211	0.91[ASN][1000 genomes]
rs10514775	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs12328041	0.80[ASN][1000 genomes]
rs12470399	0.82[CHB][hapmap]
rs12471027	0.91[ASN][1000 genomes]
rs12478596	0.82[CHB][hapmap]
rs12478742	0.82[CHB][hapmap]
rs13001536	0.91[ASN][1000 genomes]
rs13030968	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13397381	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1947179	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2004037	1.00[ASN][1000 genomes]
rs28670807	0.80[ASN][1000 genomes]
rs3213961	1.00[CEU][hapmap];0.82[CHB][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35909307	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4627543	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs59479233	1.00[ASN][1000 genomes]
rs60739635	0.91[ASN][1000 genomes]
rs62147461	0.94[ASN][1000 genomes]
rs62147464	0.94[ASN][1000 genomes]
rs62147465	0.94[ASN][1000 genomes]
rs62149034	0.97[ASN][1000 genomes]
rs62150475	1.00[ASN][1000 genomes]
rs62150505	1.00[ASN][1000 genomes]
rs62150506	1.00[ASN][1000 genomes]
rs62150508	1.00[ASN][1000 genomes]
rs6708	1.00[JPT][hapmap]
rs6713874	0.80[ASN][1000 genomes]
rs6742257	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6746691	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6757910	0.86[ASN][1000 genomes]
rs72785990	0.97[ASN][1000 genomes]
rs7574183	0.82[CHB][hapmap]
rs7586013	0.89[ASN][1000 genomes]
rs7588728	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7593383	0.94[ASN][1000 genomes]

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:33802200-33823600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr2:33803800-33822200	Weak transcription	Right Atrium	heart
3	chr2:33807000-33820600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr2:33807600-33821000	Strong transcription	NH-A	brain
5	chr2:33807800-33822800	Weak transcription	Stomach Mucosa	stomach
6	chr2:33808200-33820600	Strong transcription	Dnd41	blood
7	chr2:33808400-33822600	Weak transcription	Fetal Heart	heart
8	chr2:33808600-33820200	Strong transcription	Primary T helper cells fromperipheralblood	blood
9	chr2:33808600-33820400	Strong transcription	Primary B cells from peripheral blood	blood
10	chr2:33808600-33820400	Strong transcription	HUVEC	blood vessel
11	chr2:33808600-33820600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr2:33808600-33820800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr2:33808600-33821000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr2:33808800-33820400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr2:33808800-33820400	Strong transcription	Fetal Intestine Large	intestine
16	chr2:33808800-33820800	Strong transcription	Duodenum Mucosa	Duodenum
17	chr2:33808800-33820800	Strong transcription	Monocytes-CD14+_RO01746	blood
18	chr2:33809000-33820200	Strong transcription	Primary B cells from cord blood	blood
19	chr2:33809000-33820200	Strong transcription	Primary T cells from cord blood	blood
20	chr2:33809000-33820200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
21	chr2:33809000-33820200	Strong transcription	Rectal Mucosa Donor 29	rectum
22	chr2:33809000-33820600	Strong transcription	Primary monocytes fromperipheralblood	blood
23	chr2:33809200-33820800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr2:33809200-33823400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
25	chr2:33809400-33820200	Strong transcription	HUES6 Cell Line	embryonic stem cell
26	chr2:33810000-33820800	Strong transcription	HUES48 Cell Line	embryonic stem cell
27	chr2:33810400-33820000	Weak transcription	Pancreatic Islets	Pancreatic Islet
28	chr2:33810800-33822200	Weak transcription	Gastric	stomach
29	chr2:33810800-33822200	Weak transcription	Right Ventricle	heart
30	chr2:33811000-33822200	Weak transcription	Small Intestine	intestine
31	chr2:33812000-33823400	Weak transcription	Placenta Amnion	Placenta Amnion
32	chr2:33812800-33822800	Weak transcription	Thymus	Thymus
33	chr2:33813800-33820600	Genic enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr2:33814000-33819400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
35	chr2:33814200-33820600	Strong transcription	Primary hematopoietic stem cells	blood
36	chr2:33814400-33820400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
37	chr2:33814400-33821000	Strong transcription	Placenta	Placenta
38	chr2:33814600-33820200	Strong transcription	HSMM	muscle
39	chr2:33814600-33820600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
40	chr2:33814800-33820800	Strong transcription	HUES64 Cell Line	embryonic stem cell
41	chr2:33815000-33819800	Strong transcription	Skeletal Muscle Female	skeletal muscle
42	chr2:33815000-33820200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr2:33815000-33820200	Strong transcription	Liver	Liver
44	chr2:33815000-33820400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr2:33815000-33820800	Strong transcription	NHDF-Ad	bronchial
46	chr2:33815200-33820400	Strong transcription	Rectal Mucosa Donor 31	rectum
47	chr2:33815400-33820000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr2:33815400-33820000	Strong transcription	Muscle Satellite Cultured Cells	--
49	chr2:33815400-33820000	Strong transcription	NHLF	lung
50	chr2:33815400-33820400	Strong transcription	HepG2	liver

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