Variant report

Variant	rs3213961
Chromosome Location	chr2:33811936-33811937
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:33809873..33812031-chr2:33813225..33815224,4	K562	blood:
2	chr2:33810285..33812123-chr2:33814642..33817404,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000119812	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10185437	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10514775	0.86[CHB][hapmap]
rs13030968	1.00[CEU][hapmap];0.86[CHB][hapmap];0.82[JPT][hapmap];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13397381	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1947179	0.84[CEU][hapmap];0.88[ASN][1000 genomes]
rs2004037	0.88[ASN][1000 genomes]
rs35909307	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4627543	0.85[CEU][hapmap];0.86[CHB][hapmap];0.82[JPT][hapmap];0.88[ASN][1000 genomes]
rs59479233	0.88[ASN][1000 genomes]
rs60739635	0.91[ASN][1000 genomes]
rs62147461	0.82[ASN][1000 genomes]
rs62147464	0.82[ASN][1000 genomes]
rs62147465	0.82[ASN][1000 genomes]
rs62149034	0.91[ASN][1000 genomes]
rs62150475	0.88[ASN][1000 genomes]
rs62150505	0.88[ASN][1000 genomes]
rs62150506	0.88[ASN][1000 genomes]
rs62150508	0.88[ASN][1000 genomes]
rs6742257	1.00[CEU][hapmap];0.86[CHB][hapmap];0.82[JPT][hapmap];0.87[EUR][1000 genomes]
rs6746691	0.84[CEU][hapmap];0.86[CHB][hapmap];0.88[ASN][1000 genomes]
rs72785990	0.91[ASN][1000 genomes]
rs7561151	1.00[CEU][hapmap];0.82[CHB][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7588728	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7593383	0.83[ASN][1000 genomes]

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:33802200-33823600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr2:33803800-33822200	Weak transcription	Right Atrium	heart
3	chr2:33807000-33818200	Strong transcription	Primary T cells fromperipheralblood	blood
4	chr2:33807000-33820600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr2:33807400-33814000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr2:33807400-33817600	Weak transcription	Fetal Brain Male	brain
7	chr2:33807600-33812800	Strong transcription	NHLF	lung
8	chr2:33807600-33813800	Strong transcription	HSMM	muscle
9	chr2:33807600-33821000	Strong transcription	NH-A	brain
10	chr2:33807800-33812400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr2:33807800-33822800	Weak transcription	Stomach Mucosa	stomach
12	chr2:33808200-33813800	Strong transcription	Muscle Satellite Cultured Cells	--
13	chr2:33808200-33814600	Strong transcription	NHDF-Ad	bronchial
14	chr2:33808200-33820600	Strong transcription	Dnd41	blood
15	chr2:33808400-33812400	Weak transcription	K562	blood
16	chr2:33808400-33812800	Strong transcription	Primary hematopoietic stem cells	blood
17	chr2:33808400-33813600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr2:33808400-33814000	Strong transcription	Fetal Muscle Leg	muscle
19	chr2:33808400-33822600	Weak transcription	Fetal Heart	heart
20	chr2:33808600-33812000	Strong transcription	Placenta Amnion	Placenta Amnion
21	chr2:33808600-33812600	Strong transcription	Left Ventricle	heart
22	chr2:33808600-33812800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr2:33808600-33812800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
24	chr2:33808600-33812800	Strong transcription	Brain Inferior Temporal Lobe	brain
25	chr2:33808600-33812800	Strong transcription	Brain Substantia Nigra	brain
26	chr2:33808600-33813000	Strong transcription	Adipose Nuclei	Adipose
27	chr2:33808600-33813200	Strong transcription	Osteobl	bone
28	chr2:33808600-33813400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr2:33808600-33813600	Strong transcription	GM12878-XiMat	blood
30	chr2:33808600-33813600	Strong transcription	HSMMtube	muscle
31	chr2:33808600-33818800	Strong transcription	Primary T helper cells PMA-I stimulated	--
32	chr2:33808600-33820200	Strong transcription	Primary T helper cells fromperipheralblood	blood
33	chr2:33808600-33820400	Strong transcription	Primary B cells from peripheral blood	blood
34	chr2:33808600-33820400	Strong transcription	HUVEC	blood vessel
35	chr2:33808600-33820600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
36	chr2:33808600-33820800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr2:33808600-33821000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr2:33808800-33812200	Strong transcription	Primary T helper naive cells from peripheral blood	blood
39	chr2:33808800-33812400	Strong transcription	Primary neutrophils fromperipheralblood	blood
40	chr2:33808800-33812600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr2:33808800-33813000	Strong transcription	Fetal Muscle Trunk	muscle
42	chr2:33808800-33813000	Strong transcription	Rectal Mucosa Donor 31	rectum
43	chr2:33808800-33813600	Strong transcription	Fetal Thymus	thymus
44	chr2:33808800-33814000	Strong transcription	Placenta	Placenta
45	chr2:33808800-33814600	Strong transcription	Liver	Liver
46	chr2:33808800-33815800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr2:33808800-33816600	Strong transcription	A549	lung
48	chr2:33808800-33820400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
49	chr2:33808800-33820400	Strong transcription	Fetal Intestine Large	intestine
50	chr2:33808800-33820800	Strong transcription	Duodenum Mucosa	Duodenum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links