Variant report

Variant	rs62150475
Chromosome Location	chr2:33841392-33841393
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10180232	0.91[ASN][1000 genomes]
rs10185437	1.00[ASN][1000 genomes]
rs10188211	0.91[ASN][1000 genomes]
rs10514775	0.89[ASN][1000 genomes]
rs12328041	0.80[ASN][1000 genomes]
rs12471027	0.91[ASN][1000 genomes]
rs13001536	0.91[ASN][1000 genomes]
rs13030968	0.94[ASN][1000 genomes]
rs13397381	1.00[ASN][1000 genomes]
rs1947179	1.00[ASN][1000 genomes]
rs2004037	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28670807	0.80[ASN][1000 genomes]
rs3213961	0.88[ASN][1000 genomes]
rs35909307	0.97[ASN][1000 genomes]
rs4627543	1.00[ASN][1000 genomes]
rs59479233	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60739635	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62147461	0.98[AMR][1000 genomes];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62147464	0.93[AMR][1000 genomes];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62147465	0.93[AMR][1000 genomes];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62149034	0.97[ASN][1000 genomes]
rs62150503	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62150505	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62150506	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62150508	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6713874	0.80[ASN][1000 genomes]
rs6742257	0.89[ASN][1000 genomes]
rs6746691	1.00[ASN][1000 genomes]
rs6757910	0.86[ASN][1000 genomes]
rs72785990	0.97[ASN][1000 genomes]
rs7561151	1.00[ASN][1000 genomes]
rs7586013	0.89[ASN][1000 genomes]
rs7588728	0.97[ASN][1000 genomes]
rs7593383	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:33825200-33846600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr2:33833800-33845200	Weak transcription	Left Ventricle	heart
3	chr2:33834200-33846600	Weak transcription	Psoas Muscle	Psoas
4	chr2:33837200-33843800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr2:33838600-33844000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr2:33840000-33842800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr2:33840200-33843200	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
8	chr2:33840800-33842200	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
9	chr2:33840800-33844400	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
10	chr2:33840800-33844800	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
11	chr2:33841200-33843200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell

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