Variant report

Variant	rs62150506
Chromosome Location	chr2:33859883-33859884
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr2:33859780-33859930	HCT-116	colon:	n/a	n/a
2	CTCF	chr2:33859740-33859890	HMF	breast:	n/a	n/a
3	ZNF384	chr2:33859807-33859909	K562	blood:	n/a	n/a

Variant related genes	Relation type
HNRNPA1P61	TF binding region

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10180232	0.91[ASN][1000 genomes]
rs10185437	1.00[ASN][1000 genomes]
rs10188211	0.91[ASN][1000 genomes]
rs10514775	0.89[ASN][1000 genomes]
rs12328041	0.80[ASN][1000 genomes]
rs12471027	0.91[ASN][1000 genomes]
rs13001536	0.91[ASN][1000 genomes]
rs13030968	0.94[ASN][1000 genomes]
rs13397381	1.00[ASN][1000 genomes]
rs1947179	1.00[ASN][1000 genomes]
rs2004037	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28670807	0.80[ASN][1000 genomes]
rs3213961	0.88[ASN][1000 genomes]
rs35909307	0.97[ASN][1000 genomes]
rs4627543	1.00[ASN][1000 genomes]
rs59479233	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60739635	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62147461	0.87[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs62147464	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62147465	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62149034	0.97[ASN][1000 genomes]
rs62150475	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62150503	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62150505	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62150508	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6713874	0.80[ASN][1000 genomes]
rs6742257	0.89[ASN][1000 genomes]
rs6746691	1.00[ASN][1000 genomes]
rs6757910	0.86[ASN][1000 genomes]
rs72785990	0.97[ASN][1000 genomes]
rs7561151	1.00[ASN][1000 genomes]
rs7586013	0.89[ASN][1000 genomes]
rs7588728	0.97[ASN][1000 genomes]
rs7593383	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3350238	chr2:33849408-33979026	Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:33859400-33860200	Enhancers	iPS-20b Cell Line	embryonic stem cell
2	chr2:33859400-33860200	Enhancers	Placenta	Placenta
3	chr2:33859800-33862000	Weak transcription	HUES48 Cell Line	embryonic stem cell

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