Variant report

Variant	rs60739635
Chromosome Location	chr2:33831794-33831795
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:33830666..33833557-chr2:33837571..33839781,2	K562	blood:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10180232	0.83[ASN][1000 genomes]
rs10185437	0.91[ASN][1000 genomes]
rs10188211	0.83[ASN][1000 genomes]
rs10514775	0.81[ASN][1000 genomes]
rs12471027	0.83[ASN][1000 genomes]
rs13001536	0.83[ASN][1000 genomes]
rs13030968	0.97[ASN][1000 genomes]
rs13397381	0.91[ASN][1000 genomes]
rs1947179	0.91[ASN][1000 genomes]
rs2004037	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3213961	0.91[ASN][1000 genomes]
rs35909307	0.88[ASN][1000 genomes]
rs4627543	0.91[ASN][1000 genomes]
rs59479233	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62147461	1.00[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs62147464	0.91[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs62147465	0.91[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs62149034	0.88[ASN][1000 genomes]
rs62150475	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62150503	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62150505	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62150506	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62150508	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6742257	0.81[ASN][1000 genomes]
rs6746691	0.91[ASN][1000 genomes]
rs72785990	0.88[ASN][1000 genomes]
rs7561151	0.91[ASN][1000 genomes]
rs7586013	0.80[ASN][1000 genomes]
rs7588728	0.88[ASN][1000 genomes]
rs7593383	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:33825200-33832200	Weak transcription	Fetal Heart	heart
2	chr2:33825200-33832200	Weak transcription	Psoas Muscle	Psoas
3	chr2:33825200-33837000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr2:33825200-33846600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr2:33825400-33833000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr2:33827400-33832200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr2:33828000-33832000	Weak transcription	Ovary	ovary
8	chr2:33828600-33831800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr2:33829200-33832200	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr2:33829200-33833000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr2:33830400-33833200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr2:33830400-33833200	Weak transcription	Left Ventricle	heart
13	chr2:33830400-33834800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr2:33830600-33832000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr2:33830600-33832000	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr2:33830600-33832800	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr2:33830600-33832800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr2:33830800-33832000	Weak transcription	HUES48 Cell Line	embryonic stem cell
19	chr2:33830800-33832000	Weak transcription	HUES64 Cell Line	embryonic stem cell
20	chr2:33830800-33832000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
21	chr2:33830800-33832000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr2:33830800-33832200	Weak transcription	H1 Cell Line	embryonic stem cell
23	chr2:33830800-33832600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr2:33830800-33832600	Weak transcription	Brain Cingulate Gyrus	brain
25	chr2:33831000-33832200	Weak transcription	Placenta	Placenta
26	chr2:33831200-33831800	Enhancers	Stomach Smooth Muscle	stomach
27	chr2:33831600-33832800	Weak transcription	Fetal Stomach	stomach
28	chr2:33831600-33834600	Enhancers	iPS-15b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links