Variant report

Variant	rs62150508
Chromosome Location	chr2:33861925-33861926
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10180232	0.91[ASN][1000 genomes]
rs10185437	1.00[ASN][1000 genomes]
rs10188211	0.91[ASN][1000 genomes]
rs10514775	0.89[ASN][1000 genomes]
rs12328041	0.80[ASN][1000 genomes]
rs12471027	0.91[ASN][1000 genomes]
rs13001536	0.91[ASN][1000 genomes]
rs13030968	0.94[ASN][1000 genomes]
rs13397381	1.00[ASN][1000 genomes]
rs1947179	1.00[ASN][1000 genomes]
rs2004037	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28670807	0.80[ASN][1000 genomes]
rs3213961	0.88[ASN][1000 genomes]
rs35909307	0.97[ASN][1000 genomes]
rs4627543	1.00[ASN][1000 genomes]
rs59479233	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60739635	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62147461	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62147464	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62147465	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62149034	0.97[ASN][1000 genomes]
rs62150475	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62150503	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62150505	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62150506	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6713874	0.80[ASN][1000 genomes]
rs6742257	0.89[ASN][1000 genomes]
rs6746691	1.00[ASN][1000 genomes]
rs6757910	0.86[ASN][1000 genomes]
rs72785990	0.97[ASN][1000 genomes]
rs7561151	1.00[ASN][1000 genomes]
rs7586013	0.89[ASN][1000 genomes]
rs7588728	0.97[ASN][1000 genomes]
rs7593383	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3350238	chr2:33849408-33979026	Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv963220	chr2:33860909-33862757	Weak transcription Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:33859800-33862000	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr2:33860000-33862200	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr2:33860400-33862800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr2:33860400-33862800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr2:33860600-33862200	Enhancers	Primary hematopoietic stem cells	blood
6	chr2:33860600-33863200	Enhancers	Primary hematopoietic stem cells short term culture	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links