Variant report

Variant	rs6742257
Chromosome Location	chr2:33790330-33790331
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr2:33790128-33790927	GM12878	blood:	n/a	n/a
2	POLR2A	chr2:33790245-33790632	GM12892	blood:	n/a	n/a
3	POLR2A	chr2:33790322-33790799	GM12892	blood:	n/a	n/a

Variant related genes	Relation type
ENSG00000237133	TF binding region

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10180232	0.81[ASN][1000 genomes]
rs10185437	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10188211	0.81[ASN][1000 genomes]
rs10514775	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12470399	0.86[CHB][hapmap]
rs12471027	0.81[ASN][1000 genomes]
rs12478596	0.86[CHB][hapmap]
rs12478742	0.86[CHB][hapmap]
rs13001536	0.81[ASN][1000 genomes]
rs13030968	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13397381	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1947179	0.84[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs2004037	0.89[ASN][1000 genomes]
rs3213961	1.00[CEU][hapmap];0.86[CHB][hapmap];0.82[JPT][hapmap];0.87[EUR][1000 genomes]
rs35909307	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4627543	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs59479233	0.89[ASN][1000 genomes]
rs60739635	0.81[ASN][1000 genomes]
rs62147461	0.84[ASN][1000 genomes]
rs62147464	0.84[ASN][1000 genomes]
rs62147465	0.84[ASN][1000 genomes]
rs62149034	0.86[ASN][1000 genomes]
rs62150475	0.89[ASN][1000 genomes]
rs62150505	0.89[ASN][1000 genomes]
rs62150506	0.89[ASN][1000 genomes]
rs62150508	0.89[ASN][1000 genomes]
rs6708	1.00[JPT][hapmap]
rs6746691	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs72785990	0.86[ASN][1000 genomes]
rs7561151	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7574183	0.86[CHB][hapmap]
rs7588728	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7593383	0.84[ASN][1000 genomes]

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:33748000-33790400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr2:33757200-33809800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr2:33762200-33809800	Weak transcription	Aorta	Aorta
4	chr2:33766800-33809800	Weak transcription	Rectal Smooth Muscle	rectum
5	chr2:33772600-33791000	Strong transcription	GM12878-XiMat	blood
6	chr2:33772600-33793400	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr2:33776000-33809800	Weak transcription	Pancreas	Pancrea
8	chr2:33776800-33790600	Weak transcription	Duodenum Mucosa	Duodenum
9	chr2:33778400-33796800	Weak transcription	Liver	Liver
10	chr2:33778400-33806400	Weak transcription	Primary T cells from cord blood	blood
11	chr2:33778400-33807600	Weak transcription	NH-A	brain
12	chr2:33778400-33808600	Weak transcription	Duodenum Smooth Muscle	Duodenum
13	chr2:33780000-33808600	Weak transcription	Primary T helper cells fromperipheralblood	blood
14	chr2:33780400-33808600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr2:33780400-33809200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr2:33780600-33790800	Strong transcription	Primary B cells from peripheral blood	blood
17	chr2:33780600-33791600	Weak transcription	Primary hematopoietic stem cells	blood
18	chr2:33780800-33797400	Weak transcription	Brain Angular Gyrus	brain
19	chr2:33781200-33792800	Weak transcription	HUVEC	blood vessel
20	chr2:33781200-33809800	Weak transcription	Gastric	stomach
21	chr2:33781600-33790400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
22	chr2:33781800-33792600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
23	chr2:33782000-33807000	Weak transcription	Primary T cells fromperipheralblood	blood
24	chr2:33782200-33791800	Weak transcription	Sigmoid Colon	Sigmoid Colon
25	chr2:33784000-33792800	Weak transcription	Stomach Smooth Muscle	stomach
26	chr2:33784000-33809800	Weak transcription	Right Ventricle	heart
27	chr2:33784000-33810000	Weak transcription	Fetal Intestine Small	intestine
28	chr2:33784200-33792600	Weak transcription	Spleen	Spleen
29	chr2:33784200-33809800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr2:33784400-33792200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
31	chr2:33784400-33796000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
32	chr2:33784600-33808400	Weak transcription	Fetal Muscle Leg	muscle
33	chr2:33784800-33791600	Weak transcription	Esophagus	oesophagus
34	chr2:33785600-33791800	Weak transcription	Fetal Heart	heart
35	chr2:33785800-33791000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr2:33785800-33794200	Weak transcription	NHDF-Ad	bronchial
37	chr2:33786000-33808600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr2:33786200-33794800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
39	chr2:33786400-33798400	Weak transcription	Brain Inferior Temporal Lobe	brain
40	chr2:33786400-33808800	Weak transcription	Fetal Muscle Trunk	muscle
41	chr2:33786600-33791000	Strong transcription	Primary B cells from cord blood	blood
42	chr2:33787200-33790800	Strong transcription	Adipose Nuclei	Adipose
43	chr2:33787800-33791400	Strong transcription	Left Ventricle	heart
44	chr2:33788200-33802000	Weak transcription	Brain Cingulate Gyrus	brain
45	chr2:33788200-33805400	Weak transcription	Placenta	Placenta
46	chr2:33788400-33808800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr2:33788600-33799000	Weak transcription	Brain Substantia Nigra	brain
48	chr2:33788600-33802000	Weak transcription	Brain Anterior Caudate	brain
49	chr2:33788600-33807400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr2:33788600-33808600	Weak transcription	Psoas Muscle	Psoas

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