Variant report

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10180232	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10185437	0.91[ASN][1000 genomes]
rs10188211	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10514775	0.81[ASN][1000 genomes]
rs13001536	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13030968	0.85[ASN][1000 genomes]
rs13397381	0.91[ASN][1000 genomes]
rs1947179	0.91[ASN][1000 genomes]
rs2004037	0.91[ASN][1000 genomes]
rs2367817	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35909307	0.88[ASN][1000 genomes]
rs4556957	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4627543	0.91[ASN][1000 genomes]
rs59479233	0.91[ASN][1000 genomes]
rs60739635	0.83[ASN][1000 genomes]
rs62147461	0.97[ASN][1000 genomes]
rs62147464	0.97[ASN][1000 genomes]
rs62147465	0.97[ASN][1000 genomes]
rs62149034	0.88[ASN][1000 genomes]
rs62150475	0.91[ASN][1000 genomes]
rs62150505	0.91[ASN][1000 genomes]
rs62150506	0.91[ASN][1000 genomes]
rs62150508	0.91[ASN][1000 genomes]
rs6713874	0.83[EUR][1000 genomes]
rs6742257	0.81[ASN][1000 genomes]
rs6746691	0.91[ASN][1000 genomes]
rs6757910	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72785990	0.88[ASN][1000 genomes]
rs7561151	0.91[ASN][1000 genomes]
rs7586013	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7588728	0.88[ASN][1000 genomes]
rs7593383	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3350238	chr2:33849408-33979026	Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv963221	chr2:33877828-33892244	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:33880600-33895800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr2:33887800-33889000	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr2:33888600-33889000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr2:33888600-33889400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell

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