Variant report

Variant	rs10180232
Chromosome Location	chr2:33895783-33895784
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10185437	0.91[ASN][1000 genomes]
rs10188211	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10514775	0.81[ASN][1000 genomes]
rs12470399	0.85[CHB][hapmap]
rs12471027	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12478596	0.85[CHB][hapmap]
rs12478742	0.85[CHB][hapmap]
rs13001536	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13030968	0.85[ASN][1000 genomes]
rs13397381	0.91[ASN][1000 genomes]
rs1947179	0.91[ASN][1000 genomes]
rs2004037	0.91[ASN][1000 genomes]
rs35909307	0.88[ASN][1000 genomes]
rs4627543	0.91[ASN][1000 genomes]
rs59479233	0.91[ASN][1000 genomes]
rs60739635	0.83[ASN][1000 genomes]
rs62147461	0.97[ASN][1000 genomes]
rs62147464	0.97[ASN][1000 genomes]
rs62147465	0.97[ASN][1000 genomes]
rs62149034	0.88[ASN][1000 genomes]
rs62150475	0.91[ASN][1000 genomes]
rs62150505	0.91[ASN][1000 genomes]
rs62150506	0.91[ASN][1000 genomes]
rs62150508	0.91[ASN][1000 genomes]
rs6713874	0.86[EUR][1000 genomes]
rs6742257	0.81[ASN][1000 genomes]
rs6746691	0.91[ASN][1000 genomes]
rs6757910	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72785990	0.88[ASN][1000 genomes]
rs7561151	0.91[ASN][1000 genomes]
rs7569329	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7574183	0.85[CHB][hapmap]
rs7586013	0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7588728	0.88[ASN][1000 genomes]
rs7593383	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3350238	chr2:33849408-33979026	Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:33880600-33895800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr2:33891200-33903200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr2:33891600-33903000	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr2:33895600-33895800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr2:33895600-33896000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr2:33895600-33896000	Enhancers	Fetal Heart	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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